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psim  (Twist Bioscience)
86
Twist Bioscience psim
Comparison of absolute concentrations of indolethylamine products (median ± SD; n = 4 biological replicates; values are given in micrograms per gram per fresh weight) following transient expression of different combinations of AroG , PvTDC2 , and ( A ) PvNMT1 , PsiH , <t>PsiM</t> , and PsiK , or ( B ) OsCYP71P1 <t>,</t> <t>RmNMT</t> , AtCOMT , the mutant AtCOMTA160G , and PvNMT1 in N. benthamiana leaves. Absolute concentrations were according to external calibration curves. Concentrations of bufotenin 7 and 5-methoxy- N -methyltryptamine (5-MeO-NMT 9 ) were semiquantified using the calibration curves of psilocin 16 and 5-methoxy- N , N -dimethyltryptamine (5-MeO-DMT 10 ), respectively. Samples were collected 1 week following agroinfiltration. Unless otherwise stated, statistical significance was assessed using one-way ANOVA followed by Tukey’s post hoc test; different letters denote statistically significant differences ( P < 0.05). For psilocin 16 , 5-MeO-NMT 9 , and 5-MeO-DMT 10 , where ANOVA could not be applied due to zero variance in several gene combinations, statistical significance was assessed using two-tailed unpaired Student’s t test assuming unequal variance (** P < 0.01 and **** P < 0.0001; ns, not significant). Chemical structures of products are shown for reference and are colored according to . Additional pathway intermediates are shown in figs. S10 and S11. Plus signs indicate the biosynthetic genes included in each experiment; boxes mark the last enzyme added in a set of coexpressed genes. ( C ) AlphaFold3 model of AtCOMT bound to the cofactor SAM and substrate bufotenin 7 . Active sites of AtCOMT and the AtCOMTA160G variant are shown in insets I and II, respectively. Inset I: Steric overlap is observed between the residue of A160 (magenta) and the methyl groups of bufotenin 7 (purple spheres). Inset II: Substitution A160G (magenta, indicated by arrow) resolves the steric overlap, by removing the clashing methyl of A160, accommodating the bufotenin 7 methyl groups (purple spheres).
Psim, supplied by Twist Bioscience, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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psim  (Powersim Inc)
90
Powersim Inc psim
Comparison of absolute concentrations of indolethylamine products (median ± SD; n = 4 biological replicates; values are given in micrograms per gram per fresh weight) following transient expression of different combinations of AroG , PvTDC2 , and ( A ) PvNMT1 , PsiH , <t>PsiM</t> , and PsiK , or ( B ) OsCYP71P1 <t>,</t> <t>RmNMT</t> , AtCOMT , the mutant AtCOMTA160G , and PvNMT1 in N. benthamiana leaves. Absolute concentrations were according to external calibration curves. Concentrations of bufotenin 7 and 5-methoxy- N -methyltryptamine (5-MeO-NMT 9 ) were semiquantified using the calibration curves of psilocin 16 and 5-methoxy- N , N -dimethyltryptamine (5-MeO-DMT 10 ), respectively. Samples were collected 1 week following agroinfiltration. Unless otherwise stated, statistical significance was assessed using one-way ANOVA followed by Tukey’s post hoc test; different letters denote statistically significant differences ( P < 0.05). For psilocin 16 , 5-MeO-NMT 9 , and 5-MeO-DMT 10 , where ANOVA could not be applied due to zero variance in several gene combinations, statistical significance was assessed using two-tailed unpaired Student’s t test assuming unequal variance (** P < 0.01 and **** P < 0.0001; ns, not significant). Chemical structures of products are shown for reference and are colored according to . Additional pathway intermediates are shown in figs. S10 and S11. Plus signs indicate the biosynthetic genes included in each experiment; boxes mark the last enzyme added in a set of coexpressed genes. ( C ) AlphaFold3 model of AtCOMT bound to the cofactor SAM and substrate bufotenin 7 . Active sites of AtCOMT and the AtCOMTA160G variant are shown in insets I and II, respectively. Inset I: Steric overlap is observed between the residue of A160 (magenta) and the methyl groups of bufotenin 7 (purple spheres). Inset II: Substitution A160G (magenta, indicated by arrow) resolves the steric overlap, by removing the clashing methyl of A160, accommodating the bufotenin 7 methyl groups (purple spheres).
Psim, supplied by Powersim Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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psim  (Verizon Communications)
90
Verizon Communications psim
Comparison of absolute concentrations of indolethylamine products (median ± SD; n = 4 biological replicates; values are given in micrograms per gram per fresh weight) following transient expression of different combinations of AroG , PvTDC2 , and ( A ) PvNMT1 , PsiH , <t>PsiM</t> , and PsiK , or ( B ) OsCYP71P1 <t>,</t> <t>RmNMT</t> , AtCOMT , the mutant AtCOMTA160G , and PvNMT1 in N. benthamiana leaves. Absolute concentrations were according to external calibration curves. Concentrations of bufotenin 7 and 5-methoxy- N -methyltryptamine (5-MeO-NMT 9 ) were semiquantified using the calibration curves of psilocin 16 and 5-methoxy- N , N -dimethyltryptamine (5-MeO-DMT 10 ), respectively. Samples were collected 1 week following agroinfiltration. Unless otherwise stated, statistical significance was assessed using one-way ANOVA followed by Tukey’s post hoc test; different letters denote statistically significant differences ( P < 0.05). For psilocin 16 , 5-MeO-NMT 9 , and 5-MeO-DMT 10 , where ANOVA could not be applied due to zero variance in several gene combinations, statistical significance was assessed using two-tailed unpaired Student’s t test assuming unequal variance (** P < 0.01 and **** P < 0.0001; ns, not significant). Chemical structures of products are shown for reference and are colored according to . Additional pathway intermediates are shown in figs. S10 and S11. Plus signs indicate the biosynthetic genes included in each experiment; boxes mark the last enzyme added in a set of coexpressed genes. ( C ) AlphaFold3 model of AtCOMT bound to the cofactor SAM and substrate bufotenin 7 . Active sites of AtCOMT and the AtCOMTA160G variant are shown in insets I and II, respectively. Inset I: Steric overlap is observed between the residue of A160 (magenta) and the methyl groups of bufotenin 7 (purple spheres). Inset II: Substitution A160G (magenta, indicated by arrow) resolves the steric overlap, by removing the clashing methyl of A160, accommodating the bufotenin 7 methyl groups (purple spheres).
Psim, supplied by Verizon Communications, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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psim 2022.3 software package  (Altair Engineering Inc)
90
Altair Engineering Inc psim 2022.3 software package
Comparison of absolute concentrations of indolethylamine products (median ± SD; n = 4 biological replicates; values are given in micrograms per gram per fresh weight) following transient expression of different combinations of AroG , PvTDC2 , and ( A ) PvNMT1 , PsiH , <t>PsiM</t> , and PsiK , or ( B ) OsCYP71P1 <t>,</t> <t>RmNMT</t> , AtCOMT , the mutant AtCOMTA160G , and PvNMT1 in N. benthamiana leaves. Absolute concentrations were according to external calibration curves. Concentrations of bufotenin 7 and 5-methoxy- N -methyltryptamine (5-MeO-NMT 9 ) were semiquantified using the calibration curves of psilocin 16 and 5-methoxy- N , N -dimethyltryptamine (5-MeO-DMT 10 ), respectively. Samples were collected 1 week following agroinfiltration. Unless otherwise stated, statistical significance was assessed using one-way ANOVA followed by Tukey’s post hoc test; different letters denote statistically significant differences ( P < 0.05). For psilocin 16 , 5-MeO-NMT 9 , and 5-MeO-DMT 10 , where ANOVA could not be applied due to zero variance in several gene combinations, statistical significance was assessed using two-tailed unpaired Student’s t test assuming unequal variance (** P < 0.01 and **** P < 0.0001; ns, not significant). Chemical structures of products are shown for reference and are colored according to . Additional pathway intermediates are shown in figs. S10 and S11. Plus signs indicate the biosynthetic genes included in each experiment; boxes mark the last enzyme added in a set of coexpressed genes. ( C ) AlphaFold3 model of AtCOMT bound to the cofactor SAM and substrate bufotenin 7 . Active sites of AtCOMT and the AtCOMTA160G variant are shown in insets I and II, respectively. Inset I: Steric overlap is observed between the residue of A160 (magenta) and the methyl groups of bufotenin 7 (purple spheres). Inset II: Substitution A160G (magenta, indicated by arrow) resolves the steric overlap, by removing the clashing methyl of A160, accommodating the bufotenin 7 methyl groups (purple spheres).
Psim 2022.3 Software Package, supplied by Altair Engineering Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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psim software  (Powersim Inc)
90
Powersim Inc psim software
Comparison of absolute concentrations of indolethylamine products (median ± SD; n = 4 biological replicates; values are given in micrograms per gram per fresh weight) following transient expression of different combinations of AroG , PvTDC2 , and ( A ) PvNMT1 , PsiH , <t>PsiM</t> , and PsiK , or ( B ) OsCYP71P1 <t>,</t> <t>RmNMT</t> , AtCOMT , the mutant AtCOMTA160G , and PvNMT1 in N. benthamiana leaves. Absolute concentrations were according to external calibration curves. Concentrations of bufotenin 7 and 5-methoxy- N -methyltryptamine (5-MeO-NMT 9 ) were semiquantified using the calibration curves of psilocin 16 and 5-methoxy- N , N -dimethyltryptamine (5-MeO-DMT 10 ), respectively. Samples were collected 1 week following agroinfiltration. Unless otherwise stated, statistical significance was assessed using one-way ANOVA followed by Tukey’s post hoc test; different letters denote statistically significant differences ( P < 0.05). For psilocin 16 , 5-MeO-NMT 9 , and 5-MeO-DMT 10 , where ANOVA could not be applied due to zero variance in several gene combinations, statistical significance was assessed using two-tailed unpaired Student’s t test assuming unequal variance (** P < 0.01 and **** P < 0.0001; ns, not significant). Chemical structures of products are shown for reference and are colored according to . Additional pathway intermediates are shown in figs. S10 and S11. Plus signs indicate the biosynthetic genes included in each experiment; boxes mark the last enzyme added in a set of coexpressed genes. ( C ) AlphaFold3 model of AtCOMT bound to the cofactor SAM and substrate bufotenin 7 . Active sites of AtCOMT and the AtCOMTA160G variant are shown in insets I and II, respectively. Inset I: Steric overlap is observed between the residue of A160 (magenta) and the methyl groups of bufotenin 7 (purple spheres). Inset II: Substitution A160G (magenta, indicated by arrow) resolves the steric overlap, by removing the clashing methyl of A160, accommodating the bufotenin 7 methyl groups (purple spheres).
Psim Software, supplied by Powersim Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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psim-sah-(nor)baeocystin complexes  (Usona Institute Inc)
90
Usona Institute Inc psim-sah-(nor)baeocystin complexes
Comparison of absolute concentrations of indolethylamine products (median ± SD; n = 4 biological replicates; values are given in micrograms per gram per fresh weight) following transient expression of different combinations of AroG , PvTDC2 , and ( A ) PvNMT1 , PsiH , <t>PsiM</t> , and PsiK , or ( B ) OsCYP71P1 <t>,</t> <t>RmNMT</t> , AtCOMT , the mutant AtCOMTA160G , and PvNMT1 in N. benthamiana leaves. Absolute concentrations were according to external calibration curves. Concentrations of bufotenin 7 and 5-methoxy- N -methyltryptamine (5-MeO-NMT 9 ) were semiquantified using the calibration curves of psilocin 16 and 5-methoxy- N , N -dimethyltryptamine (5-MeO-DMT 10 ), respectively. Samples were collected 1 week following agroinfiltration. Unless otherwise stated, statistical significance was assessed using one-way ANOVA followed by Tukey’s post hoc test; different letters denote statistically significant differences ( P < 0.05). For psilocin 16 , 5-MeO-NMT 9 , and 5-MeO-DMT 10 , where ANOVA could not be applied due to zero variance in several gene combinations, statistical significance was assessed using two-tailed unpaired Student’s t test assuming unequal variance (** P < 0.01 and **** P < 0.0001; ns, not significant). Chemical structures of products are shown for reference and are colored according to . Additional pathway intermediates are shown in figs. S10 and S11. Plus signs indicate the biosynthetic genes included in each experiment; boxes mark the last enzyme added in a set of coexpressed genes. ( C ) AlphaFold3 model of AtCOMT bound to the cofactor SAM and substrate bufotenin 7 . Active sites of AtCOMT and the AtCOMTA160G variant are shown in insets I and II, respectively. Inset I: Steric overlap is observed between the residue of A160 (magenta) and the methyl groups of bufotenin 7 (purple spheres). Inset II: Substitution A160G (magenta, indicated by arrow) resolves the steric overlap, by removing the clashing methyl of A160, accommodating the bufotenin 7 methyl groups (purple spheres).
Psim Sah (Nor)baeocystin Complexes, supplied by Usona Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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phosphatase inhibitor mixture psim  (Beyotime)
90
Beyotime phosphatase inhibitor mixture psim
Comparison of absolute concentrations of indolethylamine products (median ± SD; n = 4 biological replicates; values are given in micrograms per gram per fresh weight) following transient expression of different combinations of AroG , PvTDC2 , and ( A ) PvNMT1 , PsiH , <t>PsiM</t> , and PsiK , or ( B ) OsCYP71P1 <t>,</t> <t>RmNMT</t> , AtCOMT , the mutant AtCOMTA160G , and PvNMT1 in N. benthamiana leaves. Absolute concentrations were according to external calibration curves. Concentrations of bufotenin 7 and 5-methoxy- N -methyltryptamine (5-MeO-NMT 9 ) were semiquantified using the calibration curves of psilocin 16 and 5-methoxy- N , N -dimethyltryptamine (5-MeO-DMT 10 ), respectively. Samples were collected 1 week following agroinfiltration. Unless otherwise stated, statistical significance was assessed using one-way ANOVA followed by Tukey’s post hoc test; different letters denote statistically significant differences ( P < 0.05). For psilocin 16 , 5-MeO-NMT 9 , and 5-MeO-DMT 10 , where ANOVA could not be applied due to zero variance in several gene combinations, statistical significance was assessed using two-tailed unpaired Student’s t test assuming unequal variance (** P < 0.01 and **** P < 0.0001; ns, not significant). Chemical structures of products are shown for reference and are colored according to . Additional pathway intermediates are shown in figs. S10 and S11. Plus signs indicate the biosynthetic genes included in each experiment; boxes mark the last enzyme added in a set of coexpressed genes. ( C ) AlphaFold3 model of AtCOMT bound to the cofactor SAM and substrate bufotenin 7 . Active sites of AtCOMT and the AtCOMTA160G variant are shown in insets I and II, respectively. Inset I: Steric overlap is observed between the residue of A160 (magenta) and the methyl groups of bufotenin 7 (purple spheres). Inset II: Substitution A160G (magenta, indicated by arrow) resolves the steric overlap, by removing the clashing methyl of A160, accommodating the bufotenin 7 methyl groups (purple spheres).
Phosphatase Inhibitor Mixture Psim, supplied by Beyotime, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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psim module  (ASPEC Technologies Limited)
90
ASPEC Technologies Limited psim module
Comparison of absolute concentrations of indolethylamine products (median ± SD; n = 4 biological replicates; values are given in micrograms per gram per fresh weight) following transient expression of different combinations of AroG , PvTDC2 , and ( A ) PvNMT1 , PsiH , <t>PsiM</t> , and PsiK , or ( B ) OsCYP71P1 <t>,</t> <t>RmNMT</t> , AtCOMT , the mutant AtCOMTA160G , and PvNMT1 in N. benthamiana leaves. Absolute concentrations were according to external calibration curves. Concentrations of bufotenin 7 and 5-methoxy- N -methyltryptamine (5-MeO-NMT 9 ) were semiquantified using the calibration curves of psilocin 16 and 5-methoxy- N , N -dimethyltryptamine (5-MeO-DMT 10 ), respectively. Samples were collected 1 week following agroinfiltration. Unless otherwise stated, statistical significance was assessed using one-way ANOVA followed by Tukey’s post hoc test; different letters denote statistically significant differences ( P < 0.05). For psilocin 16 , 5-MeO-NMT 9 , and 5-MeO-DMT 10 , where ANOVA could not be applied due to zero variance in several gene combinations, statistical significance was assessed using two-tailed unpaired Student’s t test assuming unequal variance (** P < 0.01 and **** P < 0.0001; ns, not significant). Chemical structures of products are shown for reference and are colored according to . Additional pathway intermediates are shown in figs. S10 and S11. Plus signs indicate the biosynthetic genes included in each experiment; boxes mark the last enzyme added in a set of coexpressed genes. ( C ) AlphaFold3 model of AtCOMT bound to the cofactor SAM and substrate bufotenin 7 . Active sites of AtCOMT and the AtCOMTA160G variant are shown in insets I and II, respectively. Inset I: Steric overlap is observed between the residue of A160 (magenta) and the methyl groups of bufotenin 7 (purple spheres). Inset II: Substitution A160G (magenta, indicated by arrow) resolves the steric overlap, by removing the clashing methyl of A160, accommodating the bufotenin 7 methyl groups (purple spheres).
Psim Module, supplied by ASPEC Technologies Limited, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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simulink and psim  (MathWorks Inc)
90
MathWorks Inc simulink and psim
Comparison of the technical details of the algorithms used in each of the three most cited articles presented in the clusters (1–6).
Simulink And Psim, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Comparison of absolute concentrations of indolethylamine products (median ± SD; n = 4 biological replicates; values are given in micrograms per gram per fresh weight) following transient expression of different combinations of AroG , PvTDC2 , and ( A ) PvNMT1 , PsiH , PsiM , and PsiK , or ( B ) OsCYP71P1 , RmNMT , AtCOMT , the mutant AtCOMTA160G , and PvNMT1 in N. benthamiana leaves. Absolute concentrations were according to external calibration curves. Concentrations of bufotenin 7 and 5-methoxy- N -methyltryptamine (5-MeO-NMT 9 ) were semiquantified using the calibration curves of psilocin 16 and 5-methoxy- N , N -dimethyltryptamine (5-MeO-DMT 10 ), respectively. Samples were collected 1 week following agroinfiltration. Unless otherwise stated, statistical significance was assessed using one-way ANOVA followed by Tukey’s post hoc test; different letters denote statistically significant differences ( P < 0.05). For psilocin 16 , 5-MeO-NMT 9 , and 5-MeO-DMT 10 , where ANOVA could not be applied due to zero variance in several gene combinations, statistical significance was assessed using two-tailed unpaired Student’s t test assuming unequal variance (** P < 0.01 and **** P < 0.0001; ns, not significant). Chemical structures of products are shown for reference and are colored according to . Additional pathway intermediates are shown in figs. S10 and S11. Plus signs indicate the biosynthetic genes included in each experiment; boxes mark the last enzyme added in a set of coexpressed genes. ( C ) AlphaFold3 model of AtCOMT bound to the cofactor SAM and substrate bufotenin 7 . Active sites of AtCOMT and the AtCOMTA160G variant are shown in insets I and II, respectively. Inset I: Steric overlap is observed between the residue of A160 (magenta) and the methyl groups of bufotenin 7 (purple spheres). Inset II: Substitution A160G (magenta, indicated by arrow) resolves the steric overlap, by removing the clashing methyl of A160, accommodating the bufotenin 7 methyl groups (purple spheres).

Journal: Science Advances

Article Title: Complete biosynthesis of psychedelic tryptamines from three kingdoms in plants

doi: 10.1126/sciadv.aeb3034

Figure Lengend Snippet: Comparison of absolute concentrations of indolethylamine products (median ± SD; n = 4 biological replicates; values are given in micrograms per gram per fresh weight) following transient expression of different combinations of AroG , PvTDC2 , and ( A ) PvNMT1 , PsiH , PsiM , and PsiK , or ( B ) OsCYP71P1 , RmNMT , AtCOMT , the mutant AtCOMTA160G , and PvNMT1 in N. benthamiana leaves. Absolute concentrations were according to external calibration curves. Concentrations of bufotenin 7 and 5-methoxy- N -methyltryptamine (5-MeO-NMT 9 ) were semiquantified using the calibration curves of psilocin 16 and 5-methoxy- N , N -dimethyltryptamine (5-MeO-DMT 10 ), respectively. Samples were collected 1 week following agroinfiltration. Unless otherwise stated, statistical significance was assessed using one-way ANOVA followed by Tukey’s post hoc test; different letters denote statistically significant differences ( P < 0.05). For psilocin 16 , 5-MeO-NMT 9 , and 5-MeO-DMT 10 , where ANOVA could not be applied due to zero variance in several gene combinations, statistical significance was assessed using two-tailed unpaired Student’s t test assuming unequal variance (** P < 0.01 and **** P < 0.0001; ns, not significant). Chemical structures of products are shown for reference and are colored according to . Additional pathway intermediates are shown in figs. S10 and S11. Plus signs indicate the biosynthetic genes included in each experiment; boxes mark the last enzyme added in a set of coexpressed genes. ( C ) AlphaFold3 model of AtCOMT bound to the cofactor SAM and substrate bufotenin 7 . Active sites of AtCOMT and the AtCOMTA160G variant are shown in insets I and II, respectively. Inset I: Steric overlap is observed between the residue of A160 (magenta) and the methyl groups of bufotenin 7 (purple spheres). Inset II: Substitution A160G (magenta, indicated by arrow) resolves the steric overlap, by removing the clashing methyl of A160, accommodating the bufotenin 7 methyl groups (purple spheres).

Article Snippet: RmNMT , PsiH , PsiK , PsiM , OsCYP71P1 , AtCOMT , AtCOMTA160G , RebF , RebH , PyrH , and SttH coding sequences were codon optimized for expression in N. tabacum and synthesized by Twist Biosciences.

Techniques: Comparison, Expressing, Mutagenesis, Two Tailed Test, Variant Assay, Residue

Comparison of the technical details of the algorithms used in each of the three most cited articles presented in the clusters (1–6).

Journal: Heliyon

Article Title: Fault diagnosis of photovoltaic systems using artificial intelligence: A bibliometric approach

doi: 10.1016/j.heliyon.2023.e21491

Figure Lengend Snippet: Comparison of the technical details of the algorithms used in each of the three most cited articles presented in the clusters (1–6).

Article Snippet: , , Detection and Classification , 100 , ✓ , ✓ , String disconnection and short-circuit , 740 , Matlab Simulink and PSIM , Probabilistic neural network , 1 min.

Techniques: Comparison, Biomarker Discovery, Software, Sampling, Plasmid Preparation